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In the “App Explorer” view there is an icon with two arrows, by clicking it and choose “Run Deply Wizard” it is possible to setup synchronization with a remove server via SFTP. It will then sync on save, which is not the case if you setup a connection in the “Project Explorer” view (works well if you sync manually).
In addition, Aptana Studio 3 automatically gives you access to git functionality when creating a project that uses the location of a current git directory.